PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501748.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 511aa    MW: 56273.1 Da    PI: 6.8445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11327369754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  XP_004501748.1 327 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 369
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16323388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9326369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-16327382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-12327373No hitNo description
CDDcd048739.45E-7440500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MMSRMNNNNN AWIQEEENNN TNTSPSSWPT NPNSNPNTPS SPSPFLQNFS SFKPMLEMDH  60
EEEWYMMKDM AFSPNLDNVL LQTVDSVSSS SCSPSSSIFN TLDPSPSHLQ QYFLSPNHKP  120
MNNVSSLLNN NNNNNNNPFD IPCEVGFLDP QASSVASSLL GSFVDFSSKT HLSLPHLPQN  180
KANFMGFQNS EEGSGKSVFL NRSKILRPLD SLPPSGTQPT LFQKRAALRK NMGLEIGGGG  240
SRSKCGISEG SDKKRKFSGG DEIEDLSFDG SGLNYDSDDL TESNYNNGKM EESNVKNCGN  300
ASNGNSTVTG GVDQKGKKKG MPAKNLMAER RRRKKLNDRL YMLRSVVPKI SKMDRASILG  360
DAIEYLKELL QRINDLHNEL ESTPAGSSLT PVSSFHPLTP TPPSLPSRIK EELCHSSLPS  420
PNGQPARVEV RLREGRAVNI HMFCARKPGL LLSTMRALDN LGLDIQQAVI SCFNGFVMDI  480
FRAEQCKEGQ DVHPEQIKAV LMDSAGFNGM I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316334KKKGMPAKNLMAERRRRKK
2328335ERRRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932260.0FJ393226.1 Glycine max inducer of CBF expression 4 (ICE4) mRNA, complete cds.
GenBankHM9899280.0HM989928.1 Glycine max ICEd mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501748.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-137ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A072V0Y60.0A0A072V0Y6_MEDTR; BHLH transcriptional factor
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-126bHLH family protein